Analysis of the interaction between N-acetylneuraminic acid and disaccharides on silica surface
DOI: https://doi.org/10.15407/hftp11.04.516
Abstract
Nanocomposites based on biomolecules and highly dispersed silica are quite promising for use in many fields of biotechnology. There are many methods of obtaining such materials, in particular, adsorption from liquid or gas phases. Saccharides and their derivatives are present in the human body, they are involved in metabolic process, thus it is reasonable to use them while working with biomolecules. The work considers such disaccharides as sucrose, lactose and N-acetylneuraminic acid (NANA). Being a part of glycoproteins and glycolipids, NANA is also considered to be a carbohydrate. The main objective of the study was to study the ways of interaction of NANA on the disaccharide-modified silica surface. The methods of quantum chemistry have been used to find the probable structures of three-component adsorbtion complexes at molecular level and to clarify the mutual influence of these compounds in adsorbtion process. An analysis of the results of quantum chemical calculations shows that the adsorption of an anion of N-acetylneuraminic acid on silica surface is less likely than in its molecular form. Molecules of N-acetylneuraminic acid, disaccharides and silica form intermolecular complexes due to intermolecular hydrogen bonds between polar functional (mainly –OH) groups of the analytes. The sucrose dimer is 85.4 kJ/mol stronger than the lactose one. The sucrose molecule also forms a 38.1 kJ/mol stronger intermolecular complex with the N-acetylneuraminic acid molecule compared to a similar complex where lactose is used as a disaccharide. The highest energy (245.2 kJ/mol) is released when a silica cluster interacts with the intermolecular complex of N-acetylneuraminic acid and sucrose provided silica and the sucrose molecule are in a direct contact with each other. Therefore, as studies have shown, the adsorption of N-acetylneuraminic acid is possible if silica surface is pre-modified with disaccharides. The results of quantum chemical modeling confirm the obtained experimental data.
Keywords
References
1. Shcherbak O.V., Zyuzyun A.B., Osypchuk O.S., Kovtun S.I., Galagan N.P., Trotckyi P.A. Study of biological activity of nanomaterial under the conditions of culturing sperm and oocytes of pigs in vitro. Factors of experimental evolution of organisms. 2017. 20: 256. [in Ukrainian]. https://doi.org/10.7124/FEEO.v20.775
2. Shcherbak O.V., Galagan N.P., Trotckyi P.A. Application of silicon dioxide nanoparticles in in vitro pig embryo formation technology. Nanosystems, Nanomaterials, Nanotechnologies. 2017. 15(2): 381. https://doi.org/10.15407/nnn.15.02.0381
3. Bondioli L., Ruozi B., Belletti D., Forni F., Vandelli M.A., Tosi G. Sialic acid as a potential approach for the protection and targeting of nanocarriers. Expert Opin. Drug. Deliv. 2011. 8(7): 921. https://doi.org/10.1517/17425247.2011.577061
4. Ushakova L.M., Demianenko E.M., Terets M.I., Lobanov V.V., Kartel N.T. A study on the interaction of the N-acetylneuraminic acid with monosaccharides adsorbted on ultrafine silica surface. Him. Fiz. Tehnol. Poverhni. 2020. 11(3): 420. https://doi.org/10.15407/hftp11.03.420
5. Patei L.M., Gtytcenko I.V., Galagan N.P. Adsorption of carbohydrates and N-acetylneuraminic acid on the modified surface of fine silica. In: Theoretical problems of surface chemistry, adsorption and chromatography. Klyazma - 2006. Proc. Int. Conf. P. 411. [in Russian].
6. Nosach L.V. Comparison of the efficiency of modification of nanosilicon by saccharides in liquid and gaseous dispersion media. Surface. 2014. 6(21): 83. [in Ukrainian].
7. Brown G.M., Levy H.A. Further refinement of the structure of sucrose based on neutron-diffraction data. Acta Cryst.1973. 29(4): 790. https://doi.org/10.1107/S0567740873003353
8. Ken H., Akira S. The Crystal and Molecular Structure of β-Lactose. Bull. Chem. Soc. Japan. 1974. 47(8): 1872. https://doi.org/10.1246/bcsj.47.1872
9. Schmidt M.W., Baldridge K.K., Boatz J.A., Elbert S.T., Gordon M.S., Jensen J.H., Koseki S., Matsunaga N., Nguyen K.A., Su S.J., Windus T.L., Dupuis M., Montgomery J.A. General atomic and molecular electronic structure system. J. Comput. Chem. 1993. 14(11): 1347. https://doi.org/10.1002/jcc.540141112
10. Lee C., Yang W., Parr R. G. Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Phys. Rev. B. 1988. 37(2): 785. https://doi.org/10.1103/PhysRevB.37.785
11. Becke A.D. Density functional thermochemistry. III. The role of exact exchange. J. Chem. Phys. 1993. 98(7): 5648. https://doi.org/10.1063/1.464913
12. Grimme S., Ehrlich S., Goerigk L. Effect of the damping function in dispersion corrected density functional theory. J. Comput. Chem. 2011. 32(7): 1456. https://doi.org/10.1002/jcc.21759
13. Grimme S. Density functional theory with London dispersion corrections. WIREs Comput. Mol. Sci. 2011. 1(2): 211. https://doi.org/10.1002/wcms.30
14. Cossi M., Barone V., Cammi R., Tomasi J. Ab initio study of solvated molecules: a new implementation of the polarizable continuum model. Chem. Phys. Lett. 1996. 255(4-6): 327. https://doi.org/10.1016/0009-2614(96)00349-1
15. Tomasi J., Mennucci B., Cammi R. Quantum Mechanical Continuum Solvation Models. Chem. Rev. 2005. 105(8): 2999. https://doi.org/10.1021/cr9904009
16. Kulyk T.V., Palyanytsya B.B., Halahan N.P. Molecular self-organization in nano-sized particles - carbohydrates. Nanosystems, Nanomaterials, Nanotechnologies. 2003. 1(2): 681. [in Ukrainian].
17. Tsendra O.M., Lobanov V.V. Formation of Carbohydrate Film on the Surfaces of Nanodimension Silica. Physics and Chemistry of Solid State. 2006. 7(1): 93. [in Ukrainian].
18. Kochetkov N.K., Bochkov A.F. Chemistry of Carbohydrates. (Moscow: Khimiya, 1967).
19. Parfit G., Rochester K. Adsorbtion from Solutions on Solid Surfaces. (Moscow: Mir, 1986).
20. Patei L.M., Orel I.L., Galagan N.P. Nanocomposites based on highly dispersed silica and sucrose and its effect on the surface of human erythrocytes. Bulletin of Odessa National University. Chemistry Series. 2004. 9(6): 75.
21. Ushakova L., Mischanchuk B., Galagan N., Pokrovskij V., Chujko O. Mass spectrometric study of lactose and N-acetylneuraminic acid adsorbed on the surface of ultrafine silica. Biophysical Bulletin. 2012. 28(1): 75. [in Ukrainian].
22. Gottschalk A., Thomas M.A.W. Studies on mucoproteins. V. The significance of N-acetylneuraminic acid for the viscosity of ovine submaxillary gland glycoprotein. Biochim. Biophys. Acta. 1961. 46: 91. https://doi.org/10.1016/0006-3002(61)90649-7
23. Demianenko E., Ilchenko M., Grebenyuk A., Lobanov V. A theoretical study on orthosilicic acid dissociation in water clusters. Chem. Phys. Lett. 2011. 515(4 6): 274. https://doi.org/10.1016/j.cplett.2011.09.038
24. Demianenko E., Ilchenko M., Grebenyuk A., Lobanov V., Tsendra O. A theoretical study on ascorbic acid dissociation in water clusters. J. Mol. Model. 2014. 20(3): 2128-1. https://doi.org/10.1007/s00894-014-2128-5
DOI: https://doi.org/10.15407/hftp11.04.516
Copyright (©) 2020 L. M. Ushakova, E. M. Demianenko, M. I. Terets, V. V. Lobanov, M. T. Kartel
This work is licensed under a Creative Commons Attribution 4.0 International License.